BRCAS

Biodiversity Research Center, Academia Sinica

Dr. Chaolun Allen Chen Research Fellow

Lab PI

Dr. Chaolun Allen Chen

Research Fellow

PhD – James Cook, University ,Australia,1995

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Office:Greenhouse Builiding 204

Tel:+886-2-2789-9549

Research Fields
  • Coral and coral reef evolution
  • Coral reef ecosystem and environmental change
  • Symbiosis

Research Directions

  • Coral reef hosts high biodiversity which provides a foundation stone for human civilization. Due to the disturbances from human activities, including overfishing, pollution, habitat destruction, and synergetic effect of ocean warming and acidification caused by climate change, coral reef are facing severe degradation worldwide. Corals are facing mass extinction and coral reef ecosystem are losing its ecological function and service towards end of this century, if the human-induced disturbances were not ceased. We address several important questions regarding to response mechanisms of corals and coral reefs under the impact of environmental change. First, will corals acclimatize or adapt to environmental change, particularly the impact of rising seawater temperature? If so, who are the winners? Who are the loosers? Second, what kind of mechanisms behind these winners to survive under the future scenarios? Is it driven by host corals or symbionts? Third, will the coral communities composed by the winner perform a similar ecological function as we observe from present coral reef ecosystem? Forth, what are management and conservation implications for the future coral reefs based on our research? Based on the long-term ecological research approach, we incorporate genomics, molecular ecology, physiology, and community ecology to address these questions.

 

Latest published paper

期刊論文 ( 2015 - 2018 )

  1. Derek Soto, Stephane De Palmas, Ming Jay Ho, Vianney Denis*, Chaolun Allen Chen*, 2018, “Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in Taiwan”, PLoS One, 13(8), e0202586. (SCI) (IF: 2.806; SCI ranking: 23.4%) Link
  2. Maria Dornelas*, Laura H. Antão, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Haley Arnold, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Barbosa, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti‐Cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho,Edward Castañeda‐Moya, Chaolun Allen Chen, ...etc., 2018, “BioTIME: A database of biodiversity time series for the Anthropocene”, GLOBAL ECOLOGY AND BIOGEOGRAPHY, 27(7), 760-786. (SCI) (IF: 6.045; SCI ranking: 6.5%,4.1%) Link
  3. Katrina S. Luzon*, Mei-Fang Lin*, Ma. Carmen A. Ablan Lagman, Wilfredo Roehl Y. Licuanan, Chaolun Allen Chen​​*, 2018, “Correction: Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V)”, PeerJ, 10.7717/peerj.4074/correction-1. (SCI) (IF: 2.177; SCI ranking: 31.3%) Link
  4. Sung-Yin Yang, Wai-Ling Fong, Wenhua Savanna Chow, Chia-Min Hsu, Chia-Ling Carynn Chan, Shashank Keshavmurthy*, Chaolun Allen Chen*, 2018, “Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation Sequencing”, ZOOLOGICAL STUDIES, 57, 32. (SCI) (IF: 1.008; SCI ranking: 52.1%) Link
  5. Carolin Nieder, Chaolun Allen Chen, Shao-Lun Liu*, 2018, “Long-term blooming filamentous calcareous alga provides substrate for other coral-competitive macroalgae in the degraded lagoon of Dongsha Atoll (Pratas), Taiwan”, bioRxiv, https://doi.org/10.1101/363796. Link
  6. Hawthorne L. Beyer, Emma V. Kennedy, Maria Beger, Chaolun Allen Chen, Joshua E. Cinner, Emily S. Darling, C. Mark Eakin, Ruth D. Gates, Scott F. Heron, Nancy Knowlton, David O. Obura, Stephen R. Palumbi, Hugh P. Possingham, Marji Puotinen, Rebecca K. Runting, William J. Skirving, Mark Spalding, Kerrie A. Wilson,Sally Wood, John E. Veron, Ove Hoegh‐Guldberg, 2018, “Risk‐sensitive planning for conserving coral reefs under rapid climate change”, Conservation Letters, e12587. (SCI) (IF: 7.02; SCI ranking: 3.7%) Link
  7. Sung-Yin Yang, Hsing-Ju Chen, Ming-Jay Ho, Yen-Jia Chen, Ya-Yi Huang, Wenhua Savanna Chow, Sen-Lin Tang, Ming-Shiou Jeng, Chaolun Allen Chen*, 2018, “Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China Sea”, BULLETIN OF MARINE SCIENCE, 94(4), 1543-1544. (SCI) (IF: 2.263; SCI ranking: 24.8%,30.2%) Link
  8. Sonny T. M. Lee, Shashank Keshavmurthy*, Silvia Fontana, Mezaki Takuma, Wen-Hua Chou and Chaolun Allen Chen*, 2018, “Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations.”, BMC research notes, 11, 119. Link
  9. Katrina S. Luzon*, Mei-Fang Lin*, Ma. Carmen A. Ablan Lagman, Wilfredo Roehl Y. Licuanan and Chaolun Allen Chen*, 2017, “Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphyllidae; clade V)”, PeerJ, 5, e4074. (SCI) (IF: 2.177; SCI ranking: 31.3%) Link
  10. Jia-Ho Shiu, Shashank Keshavmurthy, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen & Sen-Lin Tang*, 2017, “Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal history”, SCIENTIFIC REPORTS, 7(1), 14933. (SCI) (IF: 4.259; SCI ranking: 15.6%) Link
  11. Jih-Terng Wang​*, Shashank Keshavmurthy, Tzu-Ying Chu, Chaolun Allen Chen​*, 2017, “Diverse responses of Symbiodinium types to menthol and DCMU treatment”, PeerJ, 5, e3843. (SCI) (IF: 2.177; SCI ranking: 31.3%) Link
  12. Ching-Yu Liou, Sung-Yin Yang*, Chaolun Allen Chen*, 2017, “Unprecedented calcareous algal reefs in northern Taiwan merit high conservation priority”, CORAL REEFS, 36(4), 1253. (SCI) (IF: 2.906; SCI ranking: 12.4%) Link
  13. Vianney Denis*, Lauriane Ribas-Deulofeu, Nicolas Sturaro, Chao-Yang Kuo & Chaolun Allen Chen, 2017, “A functional approach to the structural complexity of coral assemblages based on colony morphological features”, SCIENTIFIC REPORTS, 7(1), 9849. (SCI) (IF: 4.259; SCI ranking: 15.6%) Link
  14. Yang S-H, Tseng C-H, Huang C-R, Chen C-P, Tandon K, Lee STM, Chiang P-W, Shiu J-H, Chen CA and Tang S-L, 2017, “Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals”, Frontiers in Microbiology, 8, 1094. (SCI) (IF: 4.076; SCI ranking: 20.8%) Link
  15. James Davis Reimer, Maria Eduarda Alves Santos, Hiroki Kise, Mei Lin Neo, Chaolun Allen Chen, Keryea Soong, 2017, “Diversity of Zoantharia (Anthozoa: Hexacorallia) at Dongsha Atoll in the South China Sea”, Regional Studies in Marine Science, 12, 49-57. Link
  16. Yaoyang Chuang, Marcelo Kitahara, Hironobu Fukami, Dianne Tracey, David J. Miller*, Chaolun Allen Chen*, 2017, “Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa)”, ZOOLOGICAL STUDIES, 56, 9. (SCI) (IF: 1.008; SCI ranking: 52.1%) Link
  17. Mei-Fang Lin, Aurelie Moya, Hua Ying, Chaolun Allen Chen, Ira Cooke, Eldon E. Ball, Sylvain Forêt, David J. Miller, 2017, “Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)”, Genome Biology and Evolution, 9(1),150-160. (SCI) (IF: 3.979; SCI ranking: 25.1%,29.2%) Link
  18. Shashank Keshavmurthy, Kuo-Hsun Tang, Chao-Yang Kuo, Keryea Soong, Chaolun Allen Chen*, 2017, “Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan in the South China Sea”, PeerJ, 5, e2871. (SCI) (IF: 2.177; SCI ranking: 31.3%) Link
  19. Roberto Arrigoni, Michael L Berumen, Chaolun Allen Chen, Tullia I Terraneo, Andrew H Baird, Claude Payri, Francesca Benzoni, 2016, “Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species”, MOLECULAR PHYLOGENETICS AND EVOLUTION, 105, 146-159. (SCI) (IF: 4.419; SCI ranking: 20.8%,19.2%,22.1%) Link
  20. Mei Fang Lin, Wen Hwa Chou, Marcelo V Kitahara, Chao Lun Allen Chen, David John Miller, Sylvain Foret​, 2016, “Corallimorpharians are not “naked corals”: insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses”, PeerJ, 4, e2463. (SCI) (IF: 2.177; SCI ranking: 31.3%) Link
  21. Roberto Arrigoni*, Francesca Benzoni*, Danwei Huang, Hironobu Fukami, Chaolun Allen Chen, Michael L. Berumen, Mia Hoogenboom, Damian P. Thomson, Bert W. Hoeksema, Ann F. Budd, Yuna Zayasu, Tullia I. Terraneo, Yuko F. Kitano, Andrew H. Baird, 2016, “When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus”, CONTRIBUTIONS TO ZOOLOGY, 85(4), 387-422. (SCI) (IF: 1.972; SCI ranking: 20.9%) Link
  22. S.-T. Hsiao, S.-C. Chuang, K.-S. Chen, P.-H. Ho, C.-L. Wu, C. A. Chen*, 2016, “DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigas”, Scientific Reports, 6, 34057. (SCI) (IF: 4.259; SCI ranking: 15.6%) Link
  23. H. J. Hsieh, C. K-C. Wen, Y.-C. Huang, K.-S. Chen, C.-F. Dai, C. A. Chen*, 2016, “Spatial patterns and environmental settings of non-reefal coral communities across the Tropics of Cancer in the Penghu Archipelago (Pescadores), Taiwan”, ZOOLOGICAL STUDIES, doi:10.6620/ZS.2016.55-45. (SCI) (IF: 1.008; SCI ranking: 52.1%) Link
  24. Christophe Vieira, Shashank Keshavmurthy, Se-Jong Ju, Kiseong Hyeong, Inah Seo, Chang-Keun Kang, Hyun-Ki Hong, Chaolun Allen Chen and Kwang-Sik Choi, 2016, “Population dynamics of a high-latitude coral Alveopora japonica Eguchi from Jeju Island, off the southern coast of Korea”, MARINE AND FRESHWATER RESEARCH, 67, 594-604. (SCI) (IF: 1.757; SCI ranking: 44.4%,40%,30%,40%) Link
  25. L. R. Deulofeu, V. Denis, S. De Palmas, C.-Y. Kuo, H. J. Hsieh, C. A. Chen*, 2016, “Structure of benthic communities along the Taiwan latitudinal gradient”, PLoS One, 11(8), e0160601. (SCI) (IF: 2.806; SCI ranking: 23.4%) Link
  26. G. Suzuki, S. Keshavmurthy, T. Hayashibara, C. C. Wallace, Y. Shirayama, C. A. Chen, H. Fukami, 2016, “Genetic evidence of peripheral isolation and low diversity in marginal populations of the Acropora hyacinthus complex”, CORAL REEFS, 35(4), 1419-1432. (SCI) (IF: 2.906; SCI ranking: 12.4%) Link
  27. Wen-Ming Chen, Li-Ping Liu, Chaolun Allen Chen, Jih-Terng Wang, Shih-Yi Sheu, 2016, “Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata.”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 66, 4077-4084. (SCI) (IF: 2.134; SCI ranking: 60.8%) Link
  28. M.-J. Ho, C.-M. Hsu, C. A. Chen*, 2016, “Wall of orange cup coral, Tubastraea coccinea, at the inlet breakwaters of a nuclear power plant, southern Taiwan”, Marine Biodiversity, DOI: 10.1007/s12526-016-0469-2. (SCI) (IF: 1.646; SCI ranking: 44.8%,38.9%) Link
  29. D. Huang, B. W. Hoeksema, A. Yang Amri, P. O. Ang, C. A. Chen, H. Huang, D. J. W. Lane, W. Y. Licuanan, Ouk Vibol, S. T. Vo, T. Yeemin, L. M. Chou, 2016, “ Conservation of reef corals in the South China Sea based on species and evolutionary diversity”, BIOLOGICAL CONSERVATION, 25(2), 331-344. (SCI) (IF: 4.022; SCI ranking: 14.8%,21.6%,16.6%) Link
  30. J.-T. Wang*, C.-M. Hsu, C.-Y. Kuo, P.-J. Meng, C. A. Chen*, 2015, “Physiological Outperformance at the Morphologically-Transformed Edge of the Cyanobacteriosponge Terpios hoshinota (Suberitidae: Hadromerida) when Confronting Opponent Corals”, PLoS One, 10(6), e0131509. (SCI) (IF: 2.806; SCI ranking: 23.4%) Link
  31. Shang-Yin Vanson Liu, Chia-Ling Carynn Chan, Hernyi Justin Hsieh, Silvia Fontana, Carden C. Wallace, Chaolun Allen Chen*, 2015, “Massively parallel sequencing (MPS) assays for sequencing mitochondrial genomes: the phylogenomic implications for Acropora staghorn corals (Scleractinia; Acroporidae)”, MARINE BIOLOGY, 162(6), 1383-1392. (SCI) (IF: 2.136; SCI ranking: 29.5%) Link
  32. F.-W. Kuo, C.-Y. Kuo, T.-Y. Fan, M.-C. Liu, C. A. Chen*, 2015, “Hidden ecosystem function of rabbitfishes? Siganus fuscescens feeds on the soft coral, Sarcophyton sp.”, CORAL REEFS, 34(1), 57. (SCI) (IF: 2.906; SCI ranking: 12.4%) Link
  33. Pierre-Alexandre Château, Yuan-Chao Angelo Huang, Chaolun Allen Chen, Yang-Chi Chang*, 2015, “Integrated assessment of sustainable marine cage culture through system dynamics modeling”, ECOLOGICAL MODELLING, 299, 140-146. (SCI) (IF: 2.363; SCI ranking: 38.6%) Link
  34. S. de Palmas, V. Denis, L. Ribas Deulofeu, M. Loubeyres, S. Woo, S.J. Hwang, J.I. Song, C.A. Chen*, 2015, “Symbiodinium spp. associated with high-latitude scleractinian corals from Jeju Island, South Korea”, Coral Reefs, 34(3), 919-925. (SCI) (IF: 2.906; SCI ranking: 12.4%) Link
  35. Y.-Y. Chuang, C. A. Chen*, 2015, “The complete mitochondrial genomes of Pseudosiderastrea spp (Cnidaria, Scleractinia, Siderastreidae).”, Mitochondrial DNA, 27(6), 4065-4066. (SCI) (IF: 3.35; SCI ranking: 35.9%) Link

Lab members

 

博士後研究及助理
研究生及其他人員
辦公室位置
電  話

顏綵葭    鄭雁文    陳彥嘉

吳欣儒    黃雅怡    楊松穎

林愛龍    夏翔柯(Shanky)

夏沛亞(Chateau Pierre)

 

許嘉閔    莊曜陽    高國瑋

鄭念昀    曹景昕    方慧玲

洪若譯    周文華    張添忠

高莉雁(Juliet) 高洛德(Rodrigo)

潘爾瑪(Stephane)

雷若安(Lauriane)

新溫室 204