BRCAS

Biodiversity Research Center, Academia Sinica

Dr. Daryi Wang Associate Research Fellow

Lab PI

Dr. Daryi Wang

Associate Research Fellow

Ph.D.-National Taiwan Ocean University, 1999

[ This email address is being protected from spambots. You need JavaScript enabled to view it. ]

Office: Interdisciplinary Research Building for Science and Technology A303

Tel:+886-2-2787-2271

Research Fields
  • Metagenomics
  • Evolutionary genomics

Research Directions

  • 1.Construction of microbial interaction network
    Ecological interactions are key factors in understanding both ecology and evolution of animals. Likewise, Microorganisms do not exist solely but form complex ecological interaction network. Thanks to the advancements in sequencing technology, metagenomics, a direct sequencing of DNA from bacterial communities, provides access to the composition and diversity of microbial community in various environments. With a network approach, we take the advantage of metagenomic data and document the interactions between taxa across diverse communities and explore the environmental niches occupied by microorganism. Ultimately, the interaction network will be used to predict the outcome of community alteration and the effects of perturbations, ultimately help with the engineering of complex microbial communities.
  • 2.Evolution of gene regulation
    ENCODE project has drawn a great attention, it was shown that a significant fraction of the eukaryotic genome is transcribed into RNAs without further translation. These non-coding RNAs were considered to play an important in regulatory evolution, therefore, a great amount of scientific resource has been devoted to the related researches. We are interested in the antisense transcript which is a single-stranded non-coding RNA complementary to messenger RNA. Antisense RNA is speculated to play an important role in gene regulation through the complimentary interaction. We aimed to investigate the emergence and evolution of this particular transcript using yeast as model organism.

 

Latest published paper

期刊論文 ( 2015 - 2020 )

  1. Le MH, Wang D, 2020, “Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects.”, Scientific reports, 10(1), 7547. (SCIE) (IF: 4.122; SCIE ranking: 18.8%) Link
  2. Brandon-Mong Guo-Jie, Shaw Grace Tzun-Wen, Chen Wei-Hsin, Chen Chien-Chang, Wang Daryi, 2020, “A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model”, BMC Microbiology, 20(1). (SCIE) (IF: 2.829; SCIE ranking: 42.9%) Link
  3. Chen Cheng-Yu, Chen Chih-Kuan, Chen Yi-Ying, Fang Andrew, Shaw Grace Tzun-Wen, Hung Chih-Ming, Wang Daryi, 2020, “Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests”, Microbiome, 8(1). (SCIE) (IF: 9.133; SCIE ranking: 7.9%) Link
  4. Shaw, G.T.W., Weng, C.Y., Chen, C.Y., Weng, F.C.H., Wang, D.*, 2019, “A systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion.”, SCIENTIFIC REPORTS, 10.1038/s41598-019-42987-0. (SCIE) (IF: 4.122; SCIE ranking: 21.4%)
  5. Tan TK, Low VL, Ng WH, Ibrahim J, Wang D, Tan CH, Chellappan S, Lim YAL, 2019, “Occurrence of zoonotic Cryptosporidium and Giardia duodenalis species/genotypes in urban rodents.”, Parasitology international, 69, 110-113. (SCIE) (IF: 2.055; SCIE ranking: 51.4%) Link
  6. Low VL, Takaoka H, Adler PH, Tan TK, Weng FC, Chen CY, Lim YAL, Ya'cob Z, Chen CD, Sofian-Azirun M, Wang D, 2018, “A novel molecular and chromosomal lineage of the anthropophilic Simulium (Simulium) rufibasis subgroup (Diptera: Simuliidae) in Taiwan.”, Parasitology research, 117(10), 3137-3143. (SCIE) (IF: 2.558; SCIE ranking: 37.8%) Link
  7. Weng, F.C.H., Shaw, G.T.W., Weng, C.Y., Yang, Y.J., Wang, D.*, 2017, “Inferring Microbial Interactions in the Gut of the Hong Kong Whipping Frog (Polypedates megacephalus) and a Validation Using Probiotics”, FRONTIERS IN MICROBIOLOGY, 8, 525-526. (SCIE) (IF: 4.076; SCIE ranking: 20.8%) Link
  8. Chen CY, Chen PC, Weng FC, Shaw GT, Wang D, 2017, “Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change.”, PloS one, 12(7), e0181427. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
  9. Shaw GT, Liu AC, Weng CY, Chou CY, Wang D, 2017, “Inferring microbial interactions in thermophilic and mesophilic anaerobic digestion of hog waste.”, PloS one, 12(7), e0181395. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
  10. Weng Francis Cheng-Hsuan, Yang Yi-Ju, Wang Daryi*, 2016, “Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernation”, BMC Genomics, 17(S13), 31-42. (SCIE) (IF: 3.729; SCIE ranking: 21.9%,29.9%) Link
  11. Shaw Grace Tzun-Wen, Pao Yueh-Yang, Wang Daryi*, 2016, “MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles”, BMC Bioinformatics, 17(1), 2-6. (SCIE) (IF: 2.448; SCIE ranking: 17.5%,42.5%,48.7%) Link
  12. Tzeng, T.D., Pao, Y.Y., Chen, P.C., Weng, F.C.H., Jean, W.D., Wang, D.*, 2015, “Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense).”, PLoS One, 10(7), e0132860. (SCIE) (IF: 2.766; SCIE ranking: 23.4%) Link
  13. Tsai, K.N., Lin, S.H., Liu, W.C., Wang, D.*, 2015, “Inferring microbial interaction network from microbiomic data using RMN algorithm”, BMC System biology, 9, 54. (SCIE) (IF: 2.05; SCIE ranking: 28.8%) Link
  14. Chen PC, Shih CH, Chu TJ, Wang D, Lee YC, Tzeng TD, 2015, “Population Structure and Historical Demography of the Oriental River Prawn (Macrobrachium nipponense) in Taiwan.”, PloS one, 10(12), e0145927. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
學術會議(研討會)論文 ( 2015 - 2020 )
  1. Pao, Y.Y., Wang, D.*, 2015, “Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense). Society for molecular biology and evolution”, paper presented at SMBE 2015, Vienna: SMBE, 2015-07-12 ~ 2015-07-16.