BRCAS

Latest published paper

期刊論文 ( 2015 - 2020 )

1. Chung-Yen Chen, Sen-Lin Tang, Seng-Cho Chou, 2019, “Taxonomy Based Performance Metrics for Evaluating Taxonomic Assignment Methods”, BMC BIOINFORMATICS, 20, 310. (SCIE) (IF: 2.213; SCIE ranking: 56%) Link
2. Shan-Hua Yang, Kshitij Tandon, Chih-Ying Lu, Naohisa Wada, Chao-Jen Shih, Silver Sung-Yun Hsiao, Wann-Neng Jane, Tzan-Chain Lee, Chi-Ming Yang, Chi-Te Liu, Vianney Denis, Yu-Ting Wu, Li-Ting Wang, Lina Huang, Der-Chuen Lee, Yu-Wei Wu, Hideyuki Yamashiro, Sen-Lin Tang*, 2019, “Metagenomic, phylogenetic and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera”, Microbiome, 7(1), 3. (SCIE) (IF: 8.496; SCIE ranking: 7.2%) Link
3. Duleepa Jayasundara*, Damayanthi Herath*, Damith Senanayake, Isaam Saeed, Cheng-Yu Yang, Yuan Sun, Bill C Chang, Sen-Lin Tang, Saman K Halgamuge, 2019, “ENVirT: inference of ecological characteristics of viruses from metagenomic data”, BMC Bioinformatics, 19,377. (SCIE) (IF: 2.448; SCIE ranking: 17.5%,42.5%,48.7%)
4. Yang Sung-Yin, Chen Hsing-Ju, Ho Ming-Jay, Chen Yen-Jia, Huang Ya-Yi, Chow Wenhua Savanna, Tang Sen-Lin, Jeng Ming-Shiou, Chen Chaolun Allen, 2018, “Outbreak of coral-killing cyanobacteriasponge, Terpios hoshinota, in Taiping Island (Itu Aba), Spratlys, South China Sea”, Bulletin of Marine Science, 94(4), 1543-1544. (SCIE) (IF: 2.263; SCIE ranking: 24.8%,30.2%) Link
5. Wu Yu-Ting, Yang Cheng-Yu, Chiang Pei-Wen, Tseng Ching-Hung, Chiu Hsiu-Hui, Saeed Isaam, Baatar Bayanmunkh, Rogozin Denis, Halgamuge Saman, Degermendzhi Andrei, Tang Sen-Lin*, 2018, “Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia”, Frontiers in Microbiology, 9, 1763. (SCIE) (IF: 4.076; SCIE ranking: 20.8%) Link
6. Jia-Ho Shiu, Jiun-Yan Ding, Ching-Hung Tseng, Shueh-Ping Lou, Takuma Mezaki, Yu-Ting Wu, Hsiang-Iu Wang and Sen-Lin Tang*, 2018, “A Newly Designed Primer Revealed High Phylogenetic Diversity of Endozoicomonas in Coral Reefs”, MICROBES AND ENVIRONMENTS, 33(2), 172-185. (SCIE) (IF: 2.909; SCIE ranking: 33.1%,41.6%) Link
7. Kshitij Tandon, Shan-Hua Yang, Min-Tao Wan, Chia-Chin Yang, Bayanmunkh Baatar, Chih-Yu Chiu, Jeng-Wei Tsai, Wen-Cheng Liu, and Sen-Lin Tang*, 2018, “Bacterial community in water and air of two sub-alpine lakes in Taiwan”, MICROBES AND ENVIRONMENTS, 33(2), 120-126. (SCIE) (IF: 2.909; SCIE ranking: 33.1%,41.6%) Link
8. Hsieh Chia-Jung, Zhan Shing Hei, Liao Chen-Pan, Tang Sen-Lin, Wang Liang-Chi, Watanabe Tsuyoshi, Geraldino Paul John L., Liu Shao-Lun, 2018, “The effects of contemporary selection and dispersal limitation on the community assembly of acidophilic microalgae”, Journal of Phycology, 54(5), 720-733. (SCIE) (IF: 2.608; SCIE ranking: 18.1%,24.5%) Link
9. Shiau Yo-Jin, Pai Chung-Wen, Tsai Jeng-Wei, Liu Wen-Cheng, Yam Rita S.W., Chang Shih-Chieh, Tang Sen-Lin, Chiu Chih-Yu, 2018, “Characterization of Phosphorus in a Toposequence of Subtropical Perhumid Forest Soils Facing a Subalpine Lake”, Forests, 9(6), 294. Link
10. Sheng-Chung Chen, Hsing-Hua Huang, Chieh-Yin Weng, Hsiu-Hui Chiu, Sen-Lin Tang, Denis Yu Rogozin, Andrey G. Degermendzhy, Mei-Chin Lai*, 2018, “Methanolobus psychrotolerans sp. nov., a psychrotolerant methanoarchaeon isolated from a saline meromictic lake in Siberia”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 68(4), 1378-1383. (SCIE) (IF: 2.134; SCIE ranking: 60.8%) Link
11. Kshitij Tandon, Pei-Wen Chiang, Wen-Ming Chen and Sen-Lin Tang*, 2018, “Draft Genome Sequence of Endozoicomonas acroporae sp. Acr-14T isolated from Acropora coral”, Genome Annoucement, 6(6), e01576-17. Link
12. Shih-Yi Sheu, Pei-Bei Xie, Der-Shyan Sheu, Sen-Lin Tang, Wen-Ming Chen*, 2018, “Litoribrevibacter euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 68(1), 432-437. (SCIE) (IF: 2.134; SCIE ranking: 60.8%) Link
13. Jessica Song, Aazani Mujahid, Lim, Po-Teen, Azizan Abu Samah, Birgit Quack, Klaus Pfeilsticker, Tang, Sen-Lin, Elena Ivanova, Moritz Müller, 2017, “Shotgun metagenomic analysis of microbial communities in the surface waters of the Eastern South China Sea”, Malaysian Journal of Microbiology, 13(4), 350-362. Link
14. Shiu JH, Keshavmurthy S, Chiang PW, Chen HJ, Lou SP, Tseng CH, Justin Hsieh H, Allen Chen C, Tang SL*, 2017, “Dynamics of coral-associated bacterial communities acclimated to temperature stress based on recent thermal history”, Scientific reports, 7(1), 14933. (SCIE) (IF: 4.259; SCIE ranking: 15.6%) Link
15. Sheu Shih-Yi, Lin Kai-Rou, Hsu Ming-yuan, Sheu Der-Shyan, Tang Sen-Lin, Chen Wen-Ming*, 2017, “Endozoicomonas acroporae sp. nov., isolated from Acropora coral”, International Journal of Systematic and Evolutionary Microbiology, 67(10), 3791-3797. (SCIE) (IF: 2.134; SCIE ranking: 60.8%) Link
16. Yang SH, Tseng CH, Huang CR, Chen CP, Tandon K, Lee STM, Chiang PW, Shiu JH, Chen CA, Tang SL*, 2017, “Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals.”, Frontiers in microbiology, 8, 1094. (SCIE) (IF: 4.076; SCIE ranking: 20.8%) Link
17. B Bayanmunkh*, Tang Sen-Lin, D Narangarvuu , B Ochirkhuyag , O Bolormaa, 2017, “Physico-Chemical Composition of Saline Lakes of the Gobi Desert Region, Western Mongolia”, Journal of Earth Science & Climatic Change, 08(02). Link
18. Baatar Bayanmunkh, Chuluun Buyan, Tang Sen-Lin, Bayanjargal Ochirkhuyag, Oyuntsetseg Bolormaa*, 2017, “Vertical distribution of physical–chemical features of water and bottom sediments in four saline lakes of the Khangai mountain region, Western Mongolia”, Environmental Earth Sciences, 76(3), 130. (SCIE) (IF: 1.569; SCIE ranking: 53.4%,62.9%,56.4%) Link
19. Lee, S. T.M.*, S. K. Davy, S.-L. Tang*, P. S Kench, 2017, “Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricata”, SCIENTIFIC REPORTS, 7, 43600. (SCIE) (IF: 4.259; SCIE ranking: 15.6%) Link
20. Herath D*, Jayasundara D, Ackland D, Saeed I, Tang SL, Halgamuge S, 2017, “Assessing Species Diversity Using Metavirome Data: Methods and Challenges.”, Computational and structural biotechnology journal, 15, 447-455. Link
21. Damayanthi Herath*, Sen-Lin Tang, Kshitij Tandon, David Ackland and Saman Kumara Halgamuge, 2017, “CoMet: A workflow using contig coverage and composition for binning a metagenomic sample with high precision”, BMC Bioinformatics, 8(Suppl 16), 571. (SCIE) (IF: 2.448; SCIE ranking: 17.5%,42.5%,48.7%) Link
22. Woo S, Yang SH, Chen HJ, Tseng YF, Hwang SJ, De Palmas S, Denis V, Imahara Y, Iwase F, Yum S, Tang SL*, 2017, “Geographical variations in bacterial communities associated with soft coral Scleronephthya gracillimum.”, PloS one, 12(8), e0183663. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
23. Fu-Chun Yang, Yi-Lung Chen, Sen-Lin Tang, Chang-Ping Yu, Po-Hsiang Wang, Wael Ismail, Chia-Hsiang Wang, Jiun-Yan Ding, Cheng-Yu Yang, Chia-Ying Yang, and Yin-Ru Chiang*, 2016, “Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment”, ISME Journal, 10(8), 1967-1983. (SCIE) (IF: 9.664; SCIE ranking: 2%,5.6%) Link
24. Shan-Hua Yang , Pei-Wen Chiang , Tin-Chang Hsu , Shuh-Ji Kao , Sen-Lin Tang*, 2016, “Bacterial Community Associated with Organs of Shallow Hydrothermal Vent Crab Xenograpsus testudinatus near Kuishan Island, Taiwan”, PLoS One, 11(3), e0150597. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
25. Jeng-Wei Tsai,* Timothy K. Kratz, James A. Rusak, Wan-Yu Shih, Wen-Cheng Liu, Sen-Lin Tang, and Chih-Yu Chiu, 2016, “Absence of winter and spring monsoon changes water level and rapidly shifts metabolism in a subtropical lake”, Inland Waters, 6(3), 436-448. (SCIE) (IF: 1.987; SCIE ranking: 30%,33.3%) Link
26. Bayanmunkh Baatar, Pei-Wen Chiang, Denis Yu Rogozin, Yu-Ting Wu, Ching-Hung Tseng, Cheng-Yu Yang, Hsiu-Hui Chiu, Bolormaa Oyuntsetseg, Andrey G. Degermendzhy and Sen-Lin Tang*, 2016, “Bacterial Communities of Three Saline Meromictic Lakes in Central Asia”, PLOS ONE, 11(3), e0150847. (SCIE) (IF: 2.806; SCIE ranking: 23.4%) Link
27. Lan-Feng Fan, Hsing-Ju Chen, Hwey-Lian Hsieh, Hsing-Juh Lin, Sen-Lin Tang*, 2016, “Comparing abundance, composition and environmental influences on prokaryotic ammonia oxidizers in two subtropical constructed wetlands”, ECOLOGICAL ENGINEERING, 90, 336-346. (SCIE) (IF: 2.914; SCIE ranking: 30.1%,40.8%,32.3%) Link
28. Ching-Hung Tseng, Jaw-Town Lin, Hsiu-Jon Ho, Zi-Lun Lai, Chang-Bi Wang, Sen-Lin Tang*, and Chun-Ying Wu*, 2016, “Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer”, Scientific Reports, 6, 20701. (SCIE) (IF: 4.259; SCIE ranking: 15.6%) Link
29. Jiun-Yan Ding,Jia-Ho Shiu,Wen-Ming Chen,Yin-Ru Chiang,Sen-Lin Tang*, 2016, “Genomic insight into the host-endosymbiont relationship of Endozoicomonas montiporae CL-33 with its coral host”, FRONTIERS IN MICROBIOLOGY, 7, 251. (SCIE) (IF: 4.076; SCIE ranking: 20.8%) Link
30. Sonny T.M. Lee*,Simon K. Davy,Sen-Lin Tang*,Paul S Kench,, 2016, “Mucus sugar content shapes the bacterial community structure in thermally stressed Acropora muricata”, Frontiers in Microbiology, 7, 371. (SCIE) (IF: 4.076; SCIE ranking: 20.8%) Link
31. Yang, Shan-Hua; Lee, Sonny; Huang, Chang-Rung; Tseng, Ching-Hung; Chiang, Pei-Wen; Chen, Chung-Pin; Chen, Hsing-Ju; Tang, Sen-Lin*, 2016, “Prevalence of potential nitrogen-fixing, green sulphur bacteria in the skeleton of reef-building coral Isopora palifera”, LIMNOLOGY AND OCEANOGRAPHY, 61(3), 1078-1086. (SCIE) (IF: 3.383; SCIE ranking: 10%,7.9%) Link
32. Sheu SY, Liu LP, Tang SL, Chen WM*, 2016, “Thalassotalea euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens.”, International journal of systematic and evolutionary microbiology, 66(12), 5039-5045. (SCIE) (IF: 2.134; SCIE ranking: 60.8%) Link
33. Kuei-Han Lin, Ben-Yang Liao, Hao-Wei Chang, Shiao-Wei Huang, Ting-Yan Chang, Cheng-Yu Yang, Yu-Bin Wang, Yu-Teh Kirk Lin, Yu-Wei Wu, Sen-Lin Tang*, Hon-Tsen Yu*, 2015, “Metabolic characteristics of dominant microbes and key rare species from an acidic hot spring in Taiwan revealed by metagenomics”, BMC GENOMICS, 16(1), 1029. (SCIE) (IF: 3.729; SCIE ranking: 21.9%,29.9%) Link
34. Sonny Lee, Simon Davy, Sen-Lin Tang*, Tung-Yung Fan, Paul Kench, 2015, “Successive shifts in the microbial community of the surface mucus layer and tissues of the coral Acropora muricata under thermal stress”, FEMS MICROBIOLOGY ECOLOGY, 91(12), fiv142. (SCIE) (IF: 3.72; SCIE ranking: 25.6%) Link
35. Chia-Jung Hsieh, Shing Hei Zhan, Yiching Lin, Sen-Lin Tang and Shao-Lun Liu*, 2015, “Analysis of rbcL sequences reveals the global biodiversity, community structure, and biogeographical pattern of thermoacidophilic red algae (Cyanidiales)”, JOURNAL OF PHYCOLOGY, 51(4), 682-694. (SCIE) (IF: 3; SCIE ranking: 18.4%,12.3%) Link
36. Yu-Te Lin, William B. Whitman, David C. Coleman, Shiang-Yun Shi, Sen-Lin Tang, Chih-Yu Chiu*, 2015, “Changes of soil bacterial communities in bamboo plantations at different elevations”, FEMS MICROBIOLOGY ECOLOGY, 91(5), fiv033. (SCIE) (IF: 3.495; SCIE ranking: 33.3%) Link
37. Ching-Hung Tseng, Pei-Wen Chiang, Hung-Chun Lai, Fuh-Kwo Shiah, Ting-Chang Hsu, Yi-Lung Chen, Liang-Saw Wen, Chun-Mao Tseng, Wung-Yang Shieh, Isaam Saeed, Saman Halgamuge, Sen-Lin Tang*, 2015, “Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea”, BMC GENOMICS, 16, 219. (SCIE) (IF: 3.73; SCIE ranking: 31%,24.8%) Link
38. Duleepa Jayasundara, I. Saeed, B.C. Chang, S.-L. Tang and S.K. Halgamuge*, 2015, “Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness”, BMC BIOINFORMATICS, 16(Suppl 18), S3. (SCIE) (IF: 2.213; SCIE ranking: 54.4%,50.9%,23.7%) Link

1. Shan-Hua Yang, Sen-Lin Tang*, accepted, “Endolithic microbes in coral skeletons: algae or bacteria?”, editor(s): Zhiyong Li, Symbiotic Microbiomes of Coral Reef Sponges and Corals.
2. Jia-Ho Shiu, Sen-Lin Tang*, accepted, “Endozoicomonas: Community dynamics, diversity, genomes and potential impacts on corals”, editor(s): Zhiyong Li, Symbiotic Microbiomes of Coral Reef Sponges and Corals.
3. Duleepa Jayasundara*, Sen-Lin Tang, Saman K. Halgamuge, 2017, “Human body to water reservoirs: Estimating viral population characteristics using high-throughput sequencing”, editor(s): Muniyandi Nagarajan, Metagenomics-Perspectives, Methods, and Applications, pp. 398, USA: Academic Press.

1. Sheng-Pin Yu, Hsing-Ju Chen, Sen-Lin Tang*, 2017, “Survey of Bacterial Community in Corals and Sponges of Taipin Island”, paper presented at 2017 International Symposium on Coral Reef Conservation in the South China Sea, Humanities and Social Sciences Building 1st Conference Room, Aca: Biodiversity Research Center, Academia Sinica, 2017-11-06 ~ 2017-11-07.
2. Jia-Ho Shiu, Keshavmurthy Shashank, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen, Sen-Lin Tang, 2017, “The thermal tolerance of coral-associated bacterial communities acclimated to temperature stress based on seasonal thermal history”, paper presented at 9th Taiwan Coral Reef Symposium, Academia Sinica: Taiwan Coral Reef Society, 2017-01-08.
3. Jia-Ho Shiu, Keshavmurthy Shashank, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen, Sen-Lin Tang, 2016, “Seasonal variation in short-term response of coral associated bacterial communities under temperature stress”, paper presented at 8th Asian Symposium on Microbial Ecology, National Taiwan University: Taiwan Society for Microbial Ecology, 2016-09-30 ~ 2016-10-02.
4. Shan-Hua Yang, Sen-Lin Tang, 2016, “Endolithic bacterial communities and potential functions in the coral Isopora palifera”, paper presented at The 13th International Coral Reef Symposium, Honolulu, Hawaii: International Coral Reef Society, 2016-06-19 ~ 2016-06-24.
5. Jia-Ho Shiu, Keshavmurthy Shashank, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen, Sen-Lin Tang, 2016, “The thermal tolerance of coral-associated bacterial communities acclimated to temperature stress based on seasonal thermal history”, paper presented at 13th International Coral Reef Symposium, Hawaii: International Coral Reef Society, 2016-06-19 ~ 2016-06-24.
6. Jia-Ho Shiu, Keshavmurthy Shashank, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Hernyi Justin Hsieh, Chaolun Allen Chen, Sen-Lin Tang, 2016, “Distribution of Endozoicomonas communities in stony corals reveals high diversity, geographic variation and temporal transition”, paper presented at 8th Taiwan Coral Reef Symposium, Academia Sinica: Taiwan Coral Reef Society, 2016-01-31.
7. Shan-Hua Yang, Tuan Meng Lee, Chang-Rung Huang, Ching-Hung Tseng, Pei-Wen Chiang, Chung-Pin Chen, Hsing-Ju Chen, and Sen-Lin Tang, 2016, “Endolithic bacterial communities in the coral Isopora palifera”, paper presented at Annual meeting of Taiwanese Coral Reef Society, Acadmia Sinica: Taiwanese Coral Reef Society, 2016-01-31.
8. Jia-Ho Shiu, Pei-Wen Chiang, Hsing-Ju Chen, Shueh-Ping Lou, Ching-Hung Tseng, Keshavmurthy Shashank, Allen C. Chen, Sen-Lin Tang, 2015, “Coral–Associated Microbial Communities Seasonally Acclimate Temperature Stress in Acropora muricata in Taiwan”, paper presented at Academia Sinica_OIST Joint Meeting, Academia Sinica: Academia Sinica. OIST Japan, 2015-12-14 ~ 2015-12-16.
9. Shan-Hua Yang, Sen-Lin Tang, 2015, “Endolithic microbial communities in the coral Isopora palifera”, paper presented at UCB-NTU Junior Scientist Symposium on Microbial Ecology, Genomics and Metagenomics, Life Science Building, National Taiwan University, Taiwan.: University of California, Berkeley and National Taiwan University, Taiwan, 2015-12-08.
10. Shan-Hua Yang, Sen-Lin Tang, 2015, “Prevalence of potential nitrogen-fixing, green sulphur bacteria in the skeleton of reef-building coral Isopora palifera”, paper presented at Academia Sinica-OIST Joint Meeting, ICOB, Academia Sinica: ICOB, Academia Sinica. OIST, Japan, 2015-12-14 ~ 2015-12-16.